| Sp | Pkt | Tore | Diff | g | u | v | ||
|---|---|---|---|---|---|---|---|---|
| 1. | FC Bayern München II | 34 | 73 | 72:30 | 42 | 22 | 7 | 5 |
| 2. | VfB Eichstätt | 34 | 66 | 69:44 | 25 | 19 | 9 | 6 |
| 3. | Wacker Burghausen | 34 | 56 | 50:41 | 9 | 16 | 8 | 10 |
| 4. | 1. FC Schweinfurt 05 | 34 | 55 | 55:43 | 12 | 14 | 13 | 7 |
| 5. | 1. FC Nürnberg II | 34 | 55 | 50:38 | 12 | 15 | 10 | 9 |
| 6. | FC Memmingen | 34 | 48 | 55:57 | -2 | 13 | 9 | 12 |
| 7. | FV Illertissen | 34 | 47 | 58:63 | -5 | 14 | 5 | 15 |
| 8. | TSV Buchbach | 34 | 46 | 52:48 | 4 | 13 | 7 | 14 |
| 9. | FC Ingolstadt 04 II | 34 | 45 | 53:48 | 5 | 12 | 9 | 13 |
| 10. | SpVgg Bayreuth | 34 | 45 | 51:47 | 4 | 12 | 9 | 13 |
| 11. | Viktoria Aschaffenburg | 34 | 41 | 47:54 | -7 | 9 | 14 | 11 |
| 12. | VfR Garching | 34 | 41 | 46:53 | -7 | 10 | 11 | 13 |
| 13. | SV Schalding-Heining | 34 | 41 | 41:53 | -12 | 11 | 8 | 15 |
| 14. | FC Augsburg II | 34 | 39 | 43:50 | -7 | 11 | 6 | 17 |
| 15. | SpVgg Greuther Fürth II | 34 | 38 | 45:49 | -4 | 10 | 8 | 16 |
| 16. | TSV 1860 Rosenheim | 34 | 37 | 37:58 | -21 | 10 | 7 | 17 |
| 17. | SV Heimstetten | 34 | 35 | 48:73 | -25 | 10 | 5 | 19 |
| 18. | FC Pipinsried | 34 | 33 | 46:69 | -23 | 8 | 9 | 17 |