| Sp | Pkt | Tore | Diff | g | u | v | ||
|---|---|---|---|---|---|---|---|---|
| 1. | Energie Cottbus | 24 | 45 | 49:37 | 12 | 13 | 6 | 5 |
| 2. | SC Verl | 24 | 44 | 59:35 | 24 | 12 | 8 | 4 |
| 3. | MSV Duisburg | 24 | 43 | 43:31 | 12 | 12 | 7 | 5 |
| 4. | VfL Osnabrück | 24 | 43 | 35:24 | 11 | 12 | 7 | 5 |
| 5. | Rot-Weiss Essen | 24 | 43 | 48:38 | 10 | 11 | 10 | 3 |
| 6. | SV Wehen Wiesbaden | 24 | 41 | 37:26 | 11 | 12 | 5 | 7 |
| 7. | FC Hansa Rostock | 24 | 40 | 41:27 | 14 | 10 | 10 | 4 |
| 8. | TSV 1860 München | 24 | 36 | 39:35 | 4 | 10 | 6 | 8 |
| 9. | SV Waldhof Mannheim | 24 | 36 | 40:43 | -3 | 11 | 3 | 10 |
| 10. | FC Ingolstadt | 23 | 32 | 40:31 | 9 | 8 | 8 | 7 |
| 11. | TSG 1899 Hoffenheim II | 24 | 32 | 46:42 | 4 | 9 | 5 | 10 |
| 12. | FC Viktoria Köln | 24 | 32 | 33:32 | 1 | 9 | 5 | 10 |
| 13. | VfB Stuttgart II | 24 | 32 | 29:39 | -10 | 9 | 5 | 10 |
| 14. | Jahn Regensburg | 24 | 28 | 31:37 | -6 | 8 | 4 | 12 |
| 15. | 1. FC Saarbrücken | 24 | 27 | 32:35 | -3 | 6 | 9 | 9 |
| 16. | Alemannia Aachen | 23 | 26 | 36:44 | -8 | 7 | 5 | 11 |
| 17. | Erzgebirge Aue | 24 | 24 | 27:38 | -11 | 5 | 9 | 10 |
| 18. | SSV Ulm 1846 | 23 | 22 | 31:47 | -16 | 7 | 1 | 15 |
| 19. | TSV Havelse | 24 | 19 | 33:52 | -19 | 4 | 7 | 13 |
| 20. | 1. FC Schweinfurt 05 | 23 | 9 | 19:55 | -36 | 3 | 0 | 20 |